Thanks a ton. I pulled the source and ended up digging down into nbsbuilder.exe. I was not happy with the end result. Seemed like a hack job. Ultimately, I decided to go with the solution described by Crazychief here: https://wixsharp.codeplex.com/discussions/58159, which was to embed the .NET framework in the MSI and then on a custom action extract it and install. Seems to work pretty well.
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